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Merge branch 'master' of ssh://git.sv.gnu.org/srv/git/parallel

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Conflicts:
	doc/release_new_version
This commit is contained in:
Ole Tange 2012-09-09 15:48:39 +02:00
parent 810b6fdc93 72343b3054
commit 0b5a90c11f
3 changed files with 25 additions and 7 deletions
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9
doc/FUTURE_IDEAS
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@ -1,13 +1,12 @@
Luk filen ved EOF - lad være med bare at læse videre.
> /tmp/ged; tail -f /tmp/ged| xargs -n1 -E eof & sleep 1; echo echo a >>/tmp/ged; echo eof >>/tmp/ged; seq 10 >>/tmp/ged; wait
> /tmp/ged; tail -f /tmp/ged| parallel -n1 -E eof & sleep 1; echo echo a >>/tmp/ged; echo eof >>/tmp/ged; seq 10 >>/tmp/ged; wait
> /tmp/ged; tail -f /tmp/ged| xargs -n1 -E eof & sleep 1; echo echo a >>/tmp/ged; echo eof >>/tmp/ged; seq 4 >>/tmp/ged; wait
> /tmp/ged; tail -f /tmp/ged| parallel -n1 -E eof & sleep 1; echo echo a >>/tmp/ged; echo eof >>/tmp/ged; seq 4 >>/tmp/ged; wait
Fhqwhgads som 20120122 pga 10 års jubliæum.
--timeout auto: If a jobs takes > 3*average runtime then kill it. Only after job 3.
--timeout auto: If a jobs takes > 3*moving average runtime then kill it. Only after job 3.
niceload seeks last column:
@ -26,6 +25,8 @@ cat <<'_EOF' | parallel -v echo
awk -v FS="\",\"" '{print $1, $3, $4, $5, $9, $14}' | grep -v "#" | sed -e '1d' -e 's/\"//g' -e 's/\/\/\//\t/g' | cut -f1-6,11 | sed -e 's/\/\//\t/g' -e 's/ /\t/g
_EOF
\'-tricket
ls *bed | parallel -j 10 intersectBed -a good-genes.gff -b {} -c \| awk \''BEGIN{OFS="\t\";} {print $1,$9,$4,$5,$7,$10}'\' > test.txt
FN="two spaces"
echo 1 | parallel -q echo {} "$FN"

15
doc/release_new_version
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@ -178,9 +178,24 @@ available for download at: http://ftp.gnu.org/gnu/parallel/
New in this release:
* GNU Parallel is accepted for Ubuntu Quantal.
http://packages.ubuntu.com/quantal/parallel
* GNU Parallel, where have you been all my life?
http://ssdigit.nothingisreal.com/2012/09/gnu-parallel-where-have-you-been-all-my.html
* Reference-free ddRADseq analysis tools uses GNU Parallel.
https://github.com/brantp/rtd#readme
* When bash just isn’t quick enough.
https://soimasysadmin.wordpress.com/2012/08/15/gnu-parallel-when-bash-just-isnt-quick-enough/
* Using GNU Parallel to Package Multiple Jobs in a Single PBS Job.
http://www.nas.nasa.gov/hecc/support/kb/Using-GNU-Parallel-to-Package-Multiple-Jobs-in-a-Single-PBS-Job_303.html
* GNU Parallel Notes.
http://xed.ch/help/parallel.html
* Bug fixes and man page updates.

8
packager/0install/parallel.xml
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@ -29,7 +29,9 @@ xargs or cat | sh.</description>
<needs-terminal/>
<group main="src/parallel">
<command name="run" path="src/parallel"/>
<command name="run" path="src/parallel">
<runner interface="http://gfxmonk.net/dist/0install/perl.xml"/>
</command>
<environment insert="src" mode="prepend" name="PATH"/>
<implementation id="sha1new=3bd5646ca0c38217df8278433803b44e33272954" released="2010-06-24" version="20100620">
<archive extract="parallel-20100620" href="http://ftp.gnu.org/gnu/parallel/parallel-20100620.tar.bz2" size="88834" type="application/x-bzip-compressed-tar"/>
@ -133,7 +135,7 @@ xargs or cat | sh.</description>
</group>
</interface>
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