Merge branch 'master' of ssh://git.sv.gnu.org/srv/git/parallel

Conflicts:
	doc/release_new_version

doc/FUTURE_IDEAS

@@ -1,13 +1,12 @@
 Luk filen ved EOF - lad være med bare at læse videre.
 
-> /tmp/ged; tail -f /tmp/ged| xargs -n1 -E eof & sleep 1; echo echo a >>/tmp/ged; echo eof >>/tmp/ged; seq 10 >>/tmp/ged; wait
+> /tmp/ged; tail -f /tmp/ged| xargs -n1 -E eof & sleep 1; echo echo a >>/tmp/ged; echo eof >>/tmp/ged; seq 4 >>/tmp/ged; wait
-
-> /tmp/ged; tail -f /tmp/ged| parallel -n1 -E eof & sleep 1; echo echo a >>/tmp/ged; echo eof >>/tmp/ged; seq 10 >>/tmp/ged; wait
 
+> /tmp/ged; tail -f /tmp/ged| parallel -n1 -E eof & sleep 1; echo echo a >>/tmp/ged; echo eof >>/tmp/ged; seq 4 >>/tmp/ged; wait
 
 Fhqwhgads som 20120122 pga 10 års jubliæum.
 
---timeout auto: If a jobs takes > 3*average runtime then kill it. Only after job 3.
+--timeout auto: If a jobs takes > 3*moving average runtime then kill it. Only after job 3.
 
 niceload seeks last column:
 
@@ -26,6 +25,8 @@ cat <<'_EOF' | parallel -v echo
 awk -v FS="\",\"" '{print $1, $3, $4, $5, $9, $14}' | grep -v "#" | sed -e '1d' -e 's/\"//g' -e 's/\/\/\//\t/g' | cut -f1-6,11 | sed -e 's/\/\//\t/g' -e 's/ /\t/g
 _EOF
 
+\'-tricket
+ls *bed | parallel -j 10 intersectBed -a good-genes.gff -b {} -c \| awk \''BEGIN{OFS="\t\";} {print $1,$9,$4,$5,$7,$10}'\' > test.txt
 
 FN="two  spaces"
 echo 1 | parallel -q echo {} "$FN"

doc/release_new_version

@@ -178,9 +178,24 @@ available for download at: http://ftp.gnu.org/gnu/parallel/
 
 New in this release:
 
+* GNU Parallel is accepted for Ubuntu Quantal.
+  http://packages.ubuntu.com/quantal/parallel
+
+* GNU Parallel, where have you been all my life?
+  http://ssdigit.nothingisreal.com/2012/09/gnu-parallel-where-have-you-been-all-my.html
+
+* Reference-free ddRADseq analysis tools uses GNU Parallel.
+  https://github.com/brantp/rtd#readme
+
 * When bash just isn’t quick enough.
   https://soimasysadmin.wordpress.com/2012/08/15/gnu-parallel-when-bash-just-isnt-quick-enough/
 
+* Using GNU Parallel to Package Multiple Jobs in a Single PBS Job.
+  http://www.nas.nasa.gov/hecc/support/kb/Using-GNU-Parallel-to-Package-Multiple-Jobs-in-a-Single-PBS-Job_303.html
+
+* GNU Parallel Notes.
+  http://xed.ch/help/parallel.html
+
 * Bug fixes and man page updates.
 
 

packager/0install/parallel.xml

@@ -29,7 +29,9 @@ xargs or cat | sh.</description>
 	<needs-terminal/>
 
 	<group main="src/parallel">
-		<command name="run" path="src/parallel"/>
+		<command name="run" path="src/parallel">
+			<runner interface="http://gfxmonk.net/dist/0install/perl.xml"/>
+		</command>
 		<environment insert="src" mode="prepend" name="PATH"/>
 		<implementation id="sha1new=3bd5646ca0c38217df8278433803b44e33272954" released="2010-06-24" version="20100620">
 			<archive extract="parallel-20100620" href="http://ftp.gnu.org/gnu/parallel/parallel-20100620.tar.bz2" size="88834" type="application/x-bzip-compressed-tar"/>
@@ -133,7 +135,7 @@ xargs or cat | sh.</description>
 	</group>
 </interface>
 <!-- Base64 Signature
-iEYEABECAAYFAlA1WzcACgkQ/lhgK1iJTtKhkACgxcdVkWLq2uqYma1g+qHKO9vfNJwAni1y3U2u
+iEYEABECAAYFAlBJscUACgkQ/lhgK1iJTtIllwCfUzLETjj1uAhhnACtzfx7zO58XTIAoJ4w4Q1i
-AKT0/BQ6dfyxD1y2zqru
+UwqAavHsNrAVB2F3M3jA
 
 -->