Released as 20170422 ('Санкт-Петербу́рг')

This commit is contained in:
Ole Tange 2017-04-22 23:23:24 +02:00
parent 77da672741
commit e49dd0d5d0
11 changed files with 84 additions and 32 deletions

43
NEWS
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@ -1,3 +1,46 @@
20170422
* --halt supports done in addition to success and fail.
* parset will set variables in parallel in Bash.
* Perl 5.6 on Irix is no longer supported.
* Vote for GNU Parallel's community ads on
http://meta.unix.stackexchange.com/a/4356/2972
http://meta.askubuntu.com/a/16750/22307
http://meta.serverfault.com/a/9040/45704
* GNU Parallel was cited in: Halvade-RNA: Parallel variant calling
from transcriptomic data using MapReduce
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0174575
* GNU Parallel was cited in: StrAuto: automation and parallelization
of STRUCTURE analysis
http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1593-0
* GNU Parallel was cited in: Trespassing the Boundaries: Labeling
Temporal Bounds for Object Interactions in Egocentric Video
https://128.84.21.199/pdf/1703.09026.pdf
* GNU Parallel is used in: https://github.com/lucascbeyeler/zmbackup
* Using GNU Parallel
https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
* Find and xargs and parallel
http://helpful.knobs-dials.com/index.php/Find_and_xargs_and_parallel#Parallel
* Quick Introduction to GNU Parallel
https://github.com/mlangill/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
* Data science at the command line https://www.slideshare.net/sharatsc/data-science-at-the-command-line
* Bedtools笔记 http://www.jianshu.com/p/67b0665490ac
* Bug fixes and man page updates.
20170322
* --rpl can now take arguments by adding '(regexp)' in the replacement

12
README
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@ -44,9 +44,9 @@ document.
Full installation of GNU Parallel is as simple as:
wget http://ftpmirror.gnu.org/parallel/parallel-20170322.tar.bz2
bzip2 -dc parallel-20170322.tar.bz2 | tar xvf -
cd parallel-20170322
wget http://ftpmirror.gnu.org/parallel/parallel-20170422.tar.bz2
bzip2 -dc parallel-20170422.tar.bz2 | tar xvf -
cd parallel-20170422
./configure && make && sudo make install
@ -55,9 +55,9 @@ Full installation of GNU Parallel is as simple as:
If you are not root you can add ~/bin to your path and install in
~/bin and ~/share:
wget http://ftpmirror.gnu.org/parallel/parallel-20170322.tar.bz2
bzip2 -dc parallel-20170322.tar.bz2 | tar xvf -
cd parallel-20170322
wget http://ftpmirror.gnu.org/parallel/parallel-20170422.tar.bz2
bzip2 -dc parallel-20170422.tar.bz2 | tar xvf -
cd parallel-20170422
./configure --prefix=$HOME && make && make install
Or if your system lacks 'make' you can simply copy src/parallel

20
configure vendored
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@ -1,6 +1,6 @@
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for parallel 20170322.
# Generated by GNU Autoconf 2.69 for parallel 20170422.
#
# Report bugs to <bug-parallel@gnu.org>.
#
@ -579,8 +579,8 @@ MAKEFLAGS=
# Identity of this package.
PACKAGE_NAME='parallel'
PACKAGE_TARNAME='parallel'
PACKAGE_VERSION='20170322'
PACKAGE_STRING='parallel 20170322'
PACKAGE_VERSION='20170422'
PACKAGE_STRING='parallel 20170422'
PACKAGE_BUGREPORT='bug-parallel@gnu.org'
PACKAGE_URL=''
@ -1214,7 +1214,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
\`configure' configures parallel 20170322 to adapt to many kinds of systems.
\`configure' configures parallel 20170422 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
@ -1281,7 +1281,7 @@ fi
if test -n "$ac_init_help"; then
case $ac_init_help in
short | recursive ) echo "Configuration of parallel 20170322:";;
short | recursive ) echo "Configuration of parallel 20170422:";;
esac
cat <<\_ACEOF
@ -1357,7 +1357,7 @@ fi
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
parallel configure 20170322
parallel configure 20170422
generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc.
@ -1374,7 +1374,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by parallel $as_me 20170322, which was
It was created by parallel $as_me 20170422, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@
@ -2237,7 +2237,7 @@ fi
# Define the identity of the package.
PACKAGE='parallel'
VERSION='20170322'
VERSION='20170422'
cat >>confdefs.h <<_ACEOF
@ -2880,7 +2880,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
This file was extended by parallel $as_me 20170322, which was
This file was extended by parallel $as_me 20170422, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
@ -2942,7 +2942,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
parallel config.status 20170322
parallel config.status 20170422
configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\"

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@ -1,4 +1,4 @@
AC_INIT([parallel], [20170322], [bug-parallel@gnu.org])
AC_INIT([parallel], [20170422], [bug-parallel@gnu.org])
AM_INIT_AUTOMAKE([-Wall -Werror foreign])
AC_CONFIG_HEADERS([config.h])
AC_CONFIG_FILES([

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@ -109,6 +109,9 @@ http://www.gnu.org/software/parallel/
http://www.gnu.org/software/parallel/man.html
http://www.gnu.org/software/parallel/sql.html
http://www.gnu.org/software/parallel/sem.html
http://www.gnu.org/software/parallel/env_parallel.html
http://www.gnu.org/software/parallel/parset.html
http://www.gnu.org/software/parallel/parcat.html
http://www.gnu.org/software/parallel/niceload.html
cp src/*.pdf src/*.html ../parallel-web/parallel
@ -195,7 +198,7 @@ to:parallel@gnu.org, bug-parallel@gnu.org
Subject: GNU Parallel 20170422 ('Санкт-Петербу́рг') released <<[stable]>>
GNU Parallel 20170422 ('Paris/Stockholm/London/Санкт-Петербу́рг') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/
GNU Parallel 20170422 ('Санкт-Петербу́рг') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/
<<No new functionality was introduced so this is a good candidate for a stable release.>>

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@ -1,6 +1,6 @@
<directory name="parallel" rev="200" srcmd5="ef8094ec2de88060bf1e32d83bfc1a1f" vrev="1">
<entry md5="0910ea89703cd4fee443f5a2403325bb" mtime="1490135663" name="parallel-20170322.tar.bz2" size="1490362" />
<entry md5="c80f0634d4841dd85133b077b421146e" mtime="1490135663" name="parallel.spec" size="4314" />
<entry md5="e9080ce05862bd69bc2d9a3fdfc0766b" mtime="1490135664" name="parallel_20170322.dsc" size="556" />
<entry md5="af85898a49a8311de8bf11718d4ab4b2" mtime="1490135664" name="parallel_20170322.tar.gz" size="1670238" />
<directory name="parallel" rev="202" srcmd5="fda429cef02d9586acbd456694e0fe73" vrev="2">
<entry md5="86a0368be2f9ed06578c0e7802eda47e" mtime="1492895884" name="parallel-20170422.tar.bz2" size="1543933" />
<entry md5="84c26447ed56c65df3bb936de0549bac" mtime="1492895885" name="parallel.spec" size="4483" />
<entry md5="4b675733211ff4c1d16a1966b025e9c6" mtime="1492895885" name="parallel_20170422.dsc" size="556" />
<entry md5="2955c6e4e7e6ef8bbcfe3cfd018a6d6d" mtime="1492895885" name="parallel_20170422.tar.gz" size="1725824" />
</directory>

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@ -1,8 +1,8 @@
Summary: Shell tool for executing jobs in parallel
Name: parallel
Version: 20170322
Release: 1.1
Version: 20170422
Release: 1.2
License: GPL
Group: Productivity/File utilities
URL: ftp://ftp.gnu.org/gnu/parallel
@ -65,6 +65,7 @@ rm $RPM_BUILD_ROOT%{_docdir}/niceload.html
rm $RPM_BUILD_ROOT%{_docdir}/sem.html
rm $RPM_BUILD_ROOT%{_docdir}/sql.html
rm $RPM_BUILD_ROOT%{_docdir}/parcat.html
rm $RPM_BUILD_ROOT%{_docdir}/parset.html
rm $RPM_BUILD_ROOT%{_docdir}/parallel.texi
rm $RPM_BUILD_ROOT%{_docdir}/env_parallel.texi
rm $RPM_BUILD_ROOT%{_docdir}/parallel_tutorial.texi
@ -74,6 +75,7 @@ rm $RPM_BUILD_ROOT%{_docdir}/niceload.texi
rm $RPM_BUILD_ROOT%{_docdir}/sem.texi
rm $RPM_BUILD_ROOT%{_docdir}/sql.texi
rm $RPM_BUILD_ROOT%{_docdir}/parcat.texi
rm $RPM_BUILD_ROOT%{_docdir}/parset.texi
rm $RPM_BUILD_ROOT%{_docdir}/parallel.pdf
rm $RPM_BUILD_ROOT%{_docdir}/env_parallel.pdf
rm $RPM_BUILD_ROOT%{_docdir}/parallel_tutorial.pdf
@ -83,6 +85,7 @@ rm $RPM_BUILD_ROOT%{_docdir}/niceload.pdf
rm $RPM_BUILD_ROOT%{_docdir}/sem.pdf
rm $RPM_BUILD_ROOT%{_docdir}/sql.pdf
rm $RPM_BUILD_ROOT%{_docdir}/parcat.pdf
rm $RPM_BUILD_ROOT%{_docdir}/parset.pdf
%clean
rm -rf $RPM_BUILD_ROOT
@ -92,7 +95,7 @@ rm -rf $RPM_BUILD_ROOT
/usr/bin/*
/usr/share/man/man1/*
/usr/share/man/man7/*
%doc README NEWS src/parallel.html src/env_parallel.html src/parallel_tutorial.html src/parallel_design.html src/parallel_alternatives.html src/sem.html src/sql.html src/parcat.html src/niceload.html src/parallel.texi src/env_parallel.texi src/parallel_tutorial.texi src/parallel_design.texi src/parallel_alternatives.texi src/niceload.texi src/sem.texi src/sql.texi src/parcat.texi src/parallel.pdf src/env_parallel.pdf src/parallel_tutorial.pdf src/parallel_design.pdf src/parallel_alternatives.pdf src/niceload.pdf src/sem.pdf src/sql.pdf src/parcat.pdf
%doc README NEWS src/parallel.html src/env_parallel.html src/parallel_tutorial.html src/parallel_design.html src/parallel_alternatives.html src/sem.html src/sql.html src/parcat.html src/parset.html src/niceload.html src/parallel.texi src/env_parallel.texi src/parallel_tutorial.texi src/parallel_design.texi src/parallel_alternatives.texi src/niceload.texi src/sem.texi src/sql.texi src/parcat.texi src/parset.texi src/parallel.pdf src/env_parallel.pdf src/parallel_tutorial.pdf src/parallel_design.pdf src/parallel_alternatives.pdf src/niceload.pdf src/sem.pdf src/sql.pdf src/parcat.pdf src/parset.pdf
%changelog
* Sat Jan 22 2011 Ole Tange

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@ -1,8 +1,8 @@
Summary: Shell tool for executing jobs in parallel
Name: parallel
Version: 20170322
Release: 1.1
Version: 20170422
Release: 1.2
License: GPL
Group: Productivity/File utilities
URL: ftp://ftp.gnu.org/gnu/parallel
@ -65,6 +65,7 @@ rm $RPM_BUILD_ROOT%{_docdir}/niceload.html
rm $RPM_BUILD_ROOT%{_docdir}/sem.html
rm $RPM_BUILD_ROOT%{_docdir}/sql.html
rm $RPM_BUILD_ROOT%{_docdir}/parcat.html
rm $RPM_BUILD_ROOT%{_docdir}/parset.html
rm $RPM_BUILD_ROOT%{_docdir}/parallel.texi
rm $RPM_BUILD_ROOT%{_docdir}/env_parallel.texi
rm $RPM_BUILD_ROOT%{_docdir}/parallel_tutorial.texi
@ -74,6 +75,7 @@ rm $RPM_BUILD_ROOT%{_docdir}/niceload.texi
rm $RPM_BUILD_ROOT%{_docdir}/sem.texi
rm $RPM_BUILD_ROOT%{_docdir}/sql.texi
rm $RPM_BUILD_ROOT%{_docdir}/parcat.texi
rm $RPM_BUILD_ROOT%{_docdir}/parset.texi
rm $RPM_BUILD_ROOT%{_docdir}/parallel.pdf
rm $RPM_BUILD_ROOT%{_docdir}/env_parallel.pdf
rm $RPM_BUILD_ROOT%{_docdir}/parallel_tutorial.pdf
@ -83,6 +85,7 @@ rm $RPM_BUILD_ROOT%{_docdir}/niceload.pdf
rm $RPM_BUILD_ROOT%{_docdir}/sem.pdf
rm $RPM_BUILD_ROOT%{_docdir}/sql.pdf
rm $RPM_BUILD_ROOT%{_docdir}/parcat.pdf
rm $RPM_BUILD_ROOT%{_docdir}/parset.pdf
%clean
rm -rf $RPM_BUILD_ROOT
@ -92,7 +95,7 @@ rm -rf $RPM_BUILD_ROOT
/usr/bin/*
/usr/share/man/man1/*
/usr/share/man/man7/*
%doc README NEWS src/parallel.html src/env_parallel.html src/parallel_tutorial.html src/parallel_design.html src/parallel_alternatives.html src/sem.html src/sql.html src/parcat.html src/niceload.html src/parallel.texi src/env_parallel.texi src/parallel_tutorial.texi src/parallel_design.texi src/parallel_alternatives.texi src/niceload.texi src/sem.texi src/sql.texi src/parcat.texi src/parallel.pdf src/env_parallel.pdf src/parallel_tutorial.pdf src/parallel_design.pdf src/parallel_alternatives.pdf src/niceload.pdf src/sem.pdf src/sql.pdf src/parcat.pdf
%doc README NEWS src/parallel.html src/env_parallel.html src/parallel_tutorial.html src/parallel_design.html src/parallel_alternatives.html src/sem.html src/sql.html src/parcat.html src/parset.html src/niceload.html src/parallel.texi src/env_parallel.texi src/parallel_tutorial.texi src/parallel_design.texi src/parallel_alternatives.texi src/niceload.texi src/sem.texi src/sql.texi src/parcat.texi src/parset.texi src/parallel.pdf src/env_parallel.pdf src/parallel_tutorial.pdf src/parallel_design.pdf src/parallel_alternatives.pdf src/niceload.pdf src/sem.pdf src/sql.pdf src/parcat.pdf src/parset.pdf
%changelog
* Sat Jan 22 2011 Ole Tange

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@ -24,7 +24,7 @@
use strict;
use Getopt::Long;
$Global::progname="niceload";
$Global::version = 20170323;
$Global::version = 20170422;
Getopt::Long::Configure("bundling","require_order");
get_options_from_array(\@ARGV) || die_usage();
if($opt::version) {

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@ -1363,7 +1363,7 @@ sub check_invalid_option_combinations {
sub init_globals {
# Defaults:
$Global::version = 20170417;
$Global::version = 20170422;
$Global::progname = 'parallel';
$Global::infinity = 2**31;
$Global::debug = 0;

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@ -576,7 +576,7 @@ $Global::Initfile && unlink $Global::Initfile;
exit ($err);
sub parse_options {
$Global::version = 20170323;
$Global::version = 20170422;
$Global::progname = 'sql';
# This must be done first as this may exec myself