parallel/testsuite/wanted-results/parallel-tutorial

1242 lines
42 KiB
Plaintext
Raw Permalink Normal View History

### test parallel_tutorial
fetch -o - http://pi.dk/3 ) > install.sh
$ sha1sum install.sh
12345678 51621b7f 1ee103c0 0783aae4 ef9889f8
$ md5sum install.sh
62eada78 703b5500 241b8e50 baf62758
$ sha512sum install.sh
160d3159 9480cf5c a101512f 150b7ac0 206a65dc 86f2bb6b bdf1a2bc 96bc6d06
7f8237c2 0964b67f bccf8a93 332528fa 11e5ab43 2a6226a6 ceb197ab 7f03c061
$ bash install.sh
parallel -k echo ::: A B C > abc-file
parallel -k echo ::: D E F > def-file
perl -e 'printf "A\0B\0C\0"' > abc0-file
perl -e 'printf "A_B_C_"' > abc_-file
perl -e 'printf "f1\tf2\nA\tB\nC\tD\n"' > tsv-file.tsv
perl -e 'for(1..8){print "$_\n"}' > num8
perl -e 'for(1..30000){print "$_\n"}' > num30000
perl -e 'for(1..1000000){print "$_\n"}' > num1000000
(echo %head1; echo %head2; \
sleep .3
perl -e 'for(1..10){print "$_\n"}') > num_%header
perl -e 'print "HHHHAAABBBCCC"' > fixedlen
parallel echo ::: A B C
parallel -a abc-file echo
cat abc-file | parallel echo
parallel echo ::: A B C ::: D E F
A D
A E
A F
B D
B E
B F
C D
C E
C F
parallel -a abc-file -a def-file echo
A D
A E
A F
B D
B E
B F
C D
C E
C F
cat abc-file | parallel -a - -a def-file echo
A D
A E
A F
B D
B E
B F
C D
C E
C F
cat abc-file | parallel echo :::: - def-file
A D
A E
A F
B D
B E
B F
C D
C E
C F
parallel echo ::: A B C :::: def-file
A D
A E
A F
B D
B E
B F
C D
C E
C F
2016-08-13 17:11:15 +00:00
parallel --link echo ::: A B C ::: D E F
A D
B E
C F
2016-08-13 17:11:15 +00:00
parallel --link echo ::: A B C D E ::: F G
A F
B G
C F
D G
E F
2016-08-13 17:11:15 +00:00
parallel echo :::: abc-file :::+ G H I :::: def-file
A G D
A G E
A G F
B H D
B H E
B H F
C I D
C I E
C I F
parallel echo :::: abc-file ::: G H I ::::+ def-file
A G D
A H E
A I F
B G D
B H E
B I F
C G D
C H E
C I F
parallel echo ::: A B C D E :::+ F G
A F
B G
parallel --arg-sep ,, echo ,, A B C :::: def-file
A D
A E
A F
B D
B E
B F
C D
C E
C F
parallel --arg-file-sep // echo ::: A B C // def-file
A D
A E
A F
B D
B E
B F
C D
C E
C F
parallel -d _ echo :::: abc_-file
parallel -d '\0' echo :::: abc0-file
parallel -E stop echo ::: A B stop C D
(echo 1; echo; echo 2) | parallel --no-run-if-empty echo
2016-05-17 00:11:38 +00:00
9
parallel ::: ls 'echo foo' pwd
abc-file
abc0-file
abc_-file
def-file
fixedlen
num1000000
num30000
num8
outdir
tsv-file.tsv
foo
/TMP
my_func() {
echo in my_func $1
}
export -f my_func
parallel my_func ::: 1 2 3
in my_func 1
in my_func 2
in my_func 3
parallel echo ::: A/B.C
A/B.C
parallel echo {} ::: A/B.C
A/B.C
parallel echo {.} ::: A/B.C
A/B
parallel echo {/} ::: A/B.C
B.C
parallel echo {//} ::: A/B.C
parallel echo {/.} ::: A/B.C
parallel echo {#} ::: A B C
2016-05-17 00:11:38 +00:00
9
parallel -j 2 echo {%} ::: A B C
2016-05-17 00:11:38 +00:00
9
parallel -I ,, echo ,, ::: A/B.C
A/B.C
parallel --extensionreplace ,, echo ,, ::: A/B.C
A/B
parallel --basenamereplace ,, echo ,, ::: A/B.C
B.C
parallel --dirnamereplace ,, echo ,, ::: A/B.C
parallel --basenameextensionreplace ,, echo ,, ::: A/B.C
parallel --seqreplace ,, echo ,, ::: A B C
2016-05-17 00:11:38 +00:00
9
parallel -j2 --slotreplace ,, echo ,, ::: A B C
2016-05-17 00:11:38 +00:00
9
parallel echo '{= s:\.[^.]+$::;s:\.[^.]+$::; =}' ::: foo.tar.gz
foo
parallel echo Job {#} of {= '$_=total_jobs()' =} ::: {1..5}
Job 1 of 5
Job 2 of 5
Job 3 of 5
Job 4 of 5
Job 5 of 5
parallel echo {} shell quoted is {= '$_=Q($_)' =} ::: '*/!#$'
2018-08-22 22:21:29 +00:00
*/!#$ shell quoted is '*/!#$'
2016-11-21 21:35:25 +00:00
parallel echo {= 'if($_==3) { skip() }' =} ::: {1..5}
2016-05-17 00:11:38 +00:00
9
parallel echo {= 'if($arg[1]==$arg[2]) { skip() }' =} \
::: {1..3} ::: {1..3}
1 2
1 3
2 1
2 3
3 1
3 2
parallel --parens ,,,, echo ',, s:\.[^.]+$::;s:\.[^.]+$::; ,,' \
::: foo.tar.gz
foo
parallel --rpl '.. s:\.[^.]+$::;s:\.[^.]+$::;' echo '..' \
::: foo.tar.gz
foo
parallel --rpl '{..} s:\.[^.]+$::;s:\.[^.]+$::;' echo '{..}'
::: foo.tar.gz
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 2: :::: command not found
parallel --rpl '{%(.+?)} s/$$1$//;' echo {%.tar.gz}.zip ::: foo.tar.gz
foo.zip
parallel --rpl '{/(.+?)/(.*?)} s/$$1/$$2/;' echo {/tar.gz/zip} \
::: foo.tar.gz
foo.zip
--rpl '{} '
--rpl '{#} $_=$job->seq()'
--rpl '{%} $_=$job->slot()'
--rpl '{/} s:.*/::'
--rpl '{//} $Global::use{"File::Basename"} ||=
eval "use File::Basename; 1;"; $_ = dirname($_);'
--rpl '{/.} s:.*/::; s:\.[^/.]+$::;'
--rpl '{.} s:\.[^/.]+$::'
/usr/bin/bash: line 1: --rpl: command not found
/usr/bin/bash: line 2: --rpl: command not found
/usr/bin/bash: line 3: --rpl: command not found
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 4: --rpl: command not found
/usr/bin/bash: line 6: --rpl: command not found
/usr/bin/bash: line 7: --rpl: command not found
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 8: --rpl: command not found
parallel echo {1} and {2} ::: A B ::: C D
A and C
A and D
B and C
B and D
parallel echo /={1/} //={1//} /.={1/.} .={1.} ::: A/B.C D/E.F
/=B.C //=A /.=B .=A/B
/=E.F //=D /.=E .=D/E
parallel echo 1={1} 2={2} 3={3} -1={-1} -2={-2} -3={-3} \
::: A B ::: C D ::: E F
1=A 2=C 3=E -1=E -2=C -3=A
1=A 2=C 3=F -1=F -2=C -3=A
1=A 2=D 3=E -1=E -2=D -3=A
1=A 2=D 3=F -1=F -2=D -3=A
1=B 2=C 3=E -1=E -2=C -3=B
1=B 2=C 3=F -1=F -2=C -3=B
1=B 2=D 3=E -1=E -2=D -3=B
1=B 2=D 3=F -1=F -2=D -3=B
parallel echo '{=2 s:\.[^.]+$::;s:\.[^.]+$::; =} {1}' \
::: bar ::: foo.tar.gz
foo bar
parallel --rpl '{..} s:\.[^.]+$::;s:\.[^.]+$::;' echo '{2..} {1}' \
::: bar ::: foo.tar.gz
foo bar
parallel --colsep '\t' echo 1={1} 2={2} :::: tsv-file.tsv
1=f1 2=f2
1=A 2=B
1=C 2=D
parallel --header : echo f1={f1} f2={f2} ::: f1 A B ::: f2 C D
f1=A f2=C
f1=A f2=D
f1=B f2=C
f1=B f2=D
parallel --header : --colsep '\t' echo f1={f1} f2={f2} \
:::: tsv-file.tsv
f1=A f2=B
f1=C f2=D
parallel --plus echo {} ::: dir/sub/file.ex1.ex2.ex3
parallel --plus echo {+/}/{/} ::: dir/sub/file.ex1.ex2.ex3
parallel --plus echo {.}.{+.} ::: dir/sub/file.ex1.ex2.ex3
parallel --plus echo {+/}/{/.}.{+.} ::: dir/sub/file.ex1.ex2.ex3
parallel --plus echo {..}.{+..} ::: dir/sub/file.ex1.ex2.ex3
parallel --plus echo {+/}/{/..}.{+..} ::: dir/sub/file.ex1.ex2.ex3
parallel --plus echo {...}.{+...} ::: dir/sub/file.ex1.ex2.ex3
parallel --plus echo {+/}/{/...}.{+...} ::: dir/sub/file.ex1.ex2.ex3
dir/sub/file.ex1.ex2.ex3
parallel --plus echo Job {#} of {##} ::: {1..5}
Job 1 of 5
Job 2 of 5
Job 3 of 5
Job 4 of 5
Job 5 of 5
unset myvar
echo ${myvar:-myval}
parallel --plus echo {:-myval} ::: "$myvar"
myval
myvar=abcAaAdef
echo ${myvar:2}
parallel --plus echo {:2} ::: "$myvar"
cAaAdef
echo ${myvar:2:3}
parallel --plus echo {:2:3} ::: "$myvar"
echo ${myvar#bc}
parallel --plus echo {#bc} ::: "$myvar"
echo ${myvar#abc}
parallel --plus echo {#abc} ::: "$myvar"
echo ${myvar%de}
parallel --plus echo {%de} ::: "$myvar"
echo ${myvar%def}
parallel --plus echo {%def} ::: "$myvar"
echo ${myvar/def/ghi}
parallel --plus echo {/def/ghi} ::: "$myvar"
echo ${myvar^a}
parallel --plus echo {^a} ::: "$myvar"
echo ${myvar^^a}
parallel --plus echo {^^a} ::: "$myvar"
myvar=AbcAaAdef
echo ${myvar,A}
parallel --plus echo '{,A}' ::: "$myvar"
echo ${myvar,,A}
parallel --plus echo '{,,A}' ::: "$myvar"
abcAaAdef
abcaaadef
cat num30000 | parallel --xargs echo | wc -l
2016-05-17 00:11:38 +00:00
9
cat num30000 | parallel --xargs -s 10000 echo | wc -l
2016-05-17 00:11:38 +00:00
99
cat num30000 | parallel --jobs 4 -m echo | wc -l
2016-05-17 00:11:38 +00:00
9
parallel --jobs 4 -m echo ::: 1 2 3 4 5 6 7 8 9 10
1 2 3
4 5 6
7 8 9
2016-05-17 00:11:38 +00:00
99
parallel --jobs 4 -X echo pre-{}-post ::: A B C D E F G
pre-A-post pre-B-post
pre-C-post pre-D-post
pre-E-post pre-F-post
pre-G-post
parallel -N3 echo ::: A B C D E F G H
A B C
D E F
G H
parallel -N3 echo 1={1} 2={2} 3={3} ::: A B C D E F G H
1=A 2=B 3=C
1=D 2=E 3=F
1=G 2=H 3=
parallel -N0 echo foo ::: 1 2 3
foo
perl -e 'print "@ARGV\n"' A
parallel perl -e 'print "@ARGV\n"' ::: This wont work
Warning: Input is read from the terminal. You either know what you
Warning: are doing (in which case: YOU ARE AWESOME!) or you forgot
Warning: ::: or :::: or to pipe data into parallel. If so
Warning: Press CTRL-D to exit.
perl -e 'print "@ARGV\n"'
[CTRL-D]
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 2: Warning:: command not found
parallel --trim r echo pre-{}-post ::: ' A '
pre- A-post
parallel --trim l echo pre-{}-post ::: ' A '
pre-A -post
parallel --trim lr echo pre-{}-post ::: ' A '
pre-A-post
parallel echo \={} ::: zsh bash ls
=zsh
=bash
=ls
parallel 'set a="{}"; if( { test -d "$a" } ) echo "$a is a dir"' ::: *
parallel --tag echo foo-{} ::: A B C
A foo-A
B foo-B
C foo-C
parallel --tagstring {}-bar echo foo-{} ::: A B C
A-bar foo-A
B-bar foo-B
C-bar foo-C
parallel --dryrun echo {} ::: A B C
echo A
echo B
echo C
parallel --verbose echo {} ::: A B C
echo A
echo B
echo C
parallel -j2 'printf "%s-start\n%s" {} {};
sleep {};printf "%s\n" -middle;echo {}-end' ::: 4 2 1
4-start
2-start
2-middle
2-end
1-start
1-middle
1-end
parallel -j2 --ungroup 'printf "%s-start\n%s" {} {};
sleep {};printf "%s\n" -middle;echo {}-end' ::: 4 2 1
4-start
42-start
2-middle
2-end
1-start
1-middle
1-end
-middle
parallel -j2 --linebuffer 'printf "%s-start\n%s" {} {};
sleep {};printf "%s\n" -middle;echo {}-end' ::: 4 2 1
4-start
2-start
2-middle
2-end
1-start
1-middle
1-end
parallel -j2 -k 'printf "%s-start\n%s" {} {};
sleep {};printf "%s\n" -middle;echo {}-end' ::: 4 2 1
4-start
2-start
2-middle
2-end
1-start
1-middle
1-end
parallel --files echo ::: A B C
/TMP/tempfile
parallel --tmpdir /var/tmp --files echo ::: A B C
/var/tmp/tempfile
parallel --results outdir echo ::: A B C
outdir/1/A/seq
outdir/1/A/stderr
outdir/1/A/stdout
outdir/1/B/seq
outdir/1/B/stderr
outdir/1/B/stdout
outdir/1/C/seq
outdir/1/C/stderr
outdir/1/C/stdout
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 1: outdir/1/A/seq: No such file or directory
/usr/bin/bash: line 2: outdir/1/A/stderr: No such file or directory
/usr/bin/bash: line 3: outdir/1/A/stdout: No such file or directory
/usr/bin/bash: line 4: outdir/1/B/seq: No such file or directory
/usr/bin/bash: line 5: outdir/1/B/stderr: No such file or directory
/usr/bin/bash: line 6: outdir/1/B/stdout: No such file or directory
/usr/bin/bash: line 7: outdir/1/C/seq: No such file or directory
/usr/bin/bash: line 8: outdir/1/C/stderr: No such file or directory
/usr/bin/bash: line 9: outdir/1/C/stdout: No such file or directory
parallel --header : --results outdir echo ::: f1 A B ::: f2 C D
outdir/f1/A/f2/C/seq
outdir/f1/A/f2/C/stderr
outdir/f1/A/f2/C/stdout
outdir/f1/A/f2/D/seq
outdir/f1/A/f2/D/stderr
outdir/f1/A/f2/D/stdout
outdir/f1/B/f2/C/seq
outdir/f1/B/f2/C/stderr
outdir/f1/B/f2/C/stdout
outdir/f1/B/f2/D/seq
outdir/f1/B/f2/D/stderr
outdir/f1/B/f2/D/stdout
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 1: outdir/f1/A/f2/C/seq: No such file or directory
/usr/bin/bash: line 2: outdir/f1/A/f2/C/stderr: No such file or directory
/usr/bin/bash: line 3: outdir/f1/A/f2/C/stdout: No such file or directory
/usr/bin/bash: line 4: outdir/f1/A/f2/D/seq: No such file or directory
/usr/bin/bash: line 5: outdir/f1/A/f2/D/stderr: No such file or directory
/usr/bin/bash: line 6: outdir/f1/A/f2/D/stdout: No such file or directory
/usr/bin/bash: line 7: outdir/f1/B/f2/C/seq: No such file or directory
/usr/bin/bash: line 8: outdir/f1/B/f2/C/stderr: No such file or directory
/usr/bin/bash: line 9: outdir/f1/B/f2/C/stdout: No such file or directory
/usr/bin/bash: line 10: outdir/f1/B/f2/D/seq: No such file or directory
/usr/bin/bash: line 11: outdir/f1/B/f2/D/stderr: No such file or directory
/usr/bin/bash: line 12: outdir/f1/B/f2/D/stdout: No such file or directory
echo 50% > my_jobs
sleep 1
echo 0 > my_jobs
wait
parallel --use-cpus-instead-of-cores -N0 sleep 1 :::: num8
parallel --shuf echo ::: 1 2 3 ::: a b c ::: A B C
123 abc ABC
tmux -S /tmp/tmsXXXXX attach
no sessions
parallel --delay 2.5 echo Starting {}\;date ::: 1 2 3
Starting 1
DATE OUTPUT
Starting 2
DATE OUTPUT
Starting 3
DATE OUTPUT
parallel --timeout 4.1 sleep {}\; echo {} ::: 2 4 6 8
2016-05-17 00:11:38 +00:00
9
parallel: Warning: This job was killed because it timed out:
parallel: Warning: sleep 6; echo 6
parallel: Warning: This job was killed because it timed out:
parallel: Warning: sleep 8; echo 8
parallel --timeout 200% sleep {}\; echo {} ::: 2.1 2.2 3 7 2.3
2016-05-17 00:11:38 +00:00
9
parallel: Warning: This job was killed because it timed out:
parallel: Warning: sleep 7; echo 7
parallel --eta sleep ::: 1 3 2 2 1 3 3 2 1
Computers / CPU threads / Max jobs to run
2023-07-21 02:33:22 +00:00
1:local / 9 / 9
Computer:jobs running/jobs completed/%of started jobs/Average seconds to complete
parallel --progress sleep ::: 1 3 2 2 1 3 3 2 1
Computers / CPU threads / Max jobs to run
2023-07-21 02:33:22 +00:00
1:local / 9 / 9
Computer:jobs running/jobs completed/%of started jobs/Average seconds to complete
seq 1000 | parallel -j10 --bar '(echo -n {};sleep 0.1)' \
2> >(perl -pe 'BEGIN{$/="\r";$|=1};s/\r/\n/g' |
zenity --timeout=15 --progress --auto-kill --auto-close)
parallel --joblog /tmp/log exit ::: 1 2 3 0
cat /tmp/log;
parallel --joblog /tmp/log exit ::: 1 2 3 0
cat /tmp/log; parallel --resume --joblog /tmp/log exit ::: 1 2 3 0 0 0
cat /tmp/log;
parallel --resume-failed --joblog /tmp/log exit ::: 1 2 3 0 0 0
cat /tmp/log;
2016-08-13 17:11:15 +00:00
parallel --retry-failed --joblog /tmp/log
cat /tmp/log;
parallel -j2 --halt soon,fail=1 echo {}\; exit {} ::: 0 0 1 2 3
Seq Host Starttime JobRuntime Send Receive Exitval Signal Command
1 : TIMESTAMP 9.999 0 0 1 0 exit 1
2 : TIMESTAMP 9.999 0 0 2 0 exit 2
3 : TIMESTAMP 9.999 0 0 3 0 exit 3
4 : TIMESTAMP 9.999 0 0 0 0 exit 0
Seq Host Starttime JobRuntime Send Receive Exitval Signal Command
1 : TIMESTAMP 9.999 0 0 1 0 exit 1
2 : TIMESTAMP 9.999 0 0 2 0 exit 2
3 : TIMESTAMP 9.999 0 0 3 0 exit 3
4 : TIMESTAMP 9.999 0 0 0 0 exit 0
Seq Host Starttime JobRuntime Send Receive Exitval Signal Command
1 : TIMESTAMP 9.999 0 0 1 0 exit 1
2 : TIMESTAMP 9.999 0 0 2 0 exit 2
3 : TIMESTAMP 9.999 0 0 3 0 exit 3
4 : TIMESTAMP 9.999 0 0 0 0 exit 0
5 : TIMESTAMP 9.999 0 0 0 0 exit 0
6 : TIMESTAMP 9.999 0 0 0 0 exit 0
Seq Host Starttime JobRuntime Send Receive Exitval Signal Command
1 : TIMESTAMP 9.999 0 0 1 0 exit 1
2 : TIMESTAMP 9.999 0 0 2 0 exit 2
3 : TIMESTAMP 9.999 0 0 3 0 exit 3
4 : TIMESTAMP 9.999 0 0 0 0 exit 0
5 : TIMESTAMP 9.999 0 0 0 0 exit 0
6 : TIMESTAMP 9.999 0 0 0 0 exit 0
1 : TIMESTAMP 9.999 0 0 1 0 exit 1
2 : TIMESTAMP 9.999 0 0 2 0 exit 2
3 : TIMESTAMP 9.999 0 0 3 0 exit 3
Seq Host Starttime JobRuntime Send Receive Exitval Signal Command
1 : TIMESTAMP 9.999 0 0 1 0 exit 1
2 : TIMESTAMP 9.999 0 0 2 0 exit 2
3 : TIMESTAMP 9.999 0 0 3 0 exit 3
4 : TIMESTAMP 9.999 0 0 0 0 exit 0
5 : TIMESTAMP 9.999 0 0 0 0 exit 0
6 : TIMESTAMP 9.999 0 0 0 0 exit 0
1 : TIMESTAMP 9.999 0 0 1 0 exit 1
2 : TIMESTAMP 9.999 0 0 2 0 exit 2
3 : TIMESTAMP 9.999 0 0 3 0 exit 3
2016-08-13 17:11:15 +00:00
1 : TIMESTAMP 9.999 0 0 1 0 exit 1
2 : TIMESTAMP 9.999 0 0 2 0 exit 2
3 : TIMESTAMP 9.999 0 0 3 0 exit 3
2016-05-17 00:11:38 +00:00
9
parallel -j2 --halt now,fail=1 echo {}\; exit {} ::: 0 0 1 2 3
2016-05-17 00:11:38 +00:00
9
parallel -j2 --halt soon,fail=20% echo {}\; exit {} \
::: 0 1 2 3 4 5 6 7 8 9
2016-05-17 00:11:38 +00:00
9
parallel -j2 --halt now,success=1 echo {}\; exit {} ::: 1 2 3 0 4 5 6
2016-05-17 00:11:38 +00:00
9
parallel: This job succeeded:
parallel -k --retries 3 \
'echo tried {} >>/tmp/runs; echo completed {}; exit {}' ::: 1 2 0
cat /tmp/runs
completed 1
completed 2
completed 0
tried 0
show_signals() {
perl -e 'for(keys %SIG) {
$SIG{$_} = eval "sub { print \"Got $_\\n\"; }";
}
while(1){sleep 1}'
}
export -f show_signals
echo | parallel --termseq TERM,200,TERM,100,TERM,50,KILL,25 \
-u --timeout 1 show_signals
parallel: Warning: This job was killed because it timed out:
parallel: Warning: show_signals ''
echo | parallel --termseq INT,200,TERM,100,KILL,25 \
-u --timeout 1 show_signals
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 1: show_signals: command not found
parallel --load 100% echo load is less than {} job per cpu ::: 1
load is less than 1 job per cpu
parallel --noswap echo the system is not swapping ::: now
the system is not swapping now
parallel --memfree 1G echo will run if more than 1 GB is ::: free
will run if more than 1 GB is free
parallel --nice 17 echo this is being run with nice -n ::: 17
this is being run with nice -n 17
parallel -S $SERVER1 echo running on ::: $SERVER1
running on parallel@lo
parallel -S $SERVER1 echo running on ::: username@$SERVER1
running on username@parallel@lo
parallel -S : echo running on ::: the_local_machine
running on the_local_machine
parallel -S '/usr/bin/ssh '$SERVER1 echo custom ::: ssh
custom ssh
parallel --ssh /usr/bin/ssh -S $SERVER1 echo custom ::: ssh
custom ssh
export PARALLEL_SSH=/usr/bin/ssh
parallel -S $SERVER1 echo custom ::: ssh
custom ssh
parallel -S $SERVER1 -S $SERVER2 echo ::: running on more hosts
running
on
more
hosts
echo $SERVER1 > nodefile
# Force 4 cores, special ssh-command, username
echo 4//usr/bin/ssh $SERVER2 >> nodefile
parallel --sshloginfile nodefile echo ::: running on more hosts
running
on
more
hosts
parallel -S 4/$SERVER1 echo force {} cpus on server ::: 4
force 4 cpus on server
parallel --hostgroup -S @grp1/$SERVER1 -S @grp2/$SERVER2 echo {} \
::: run_on_grp1@grp1 run_on_grp2@grp2
run_on_grp1
run_on_grp2
echo This is input_file > input_file
parallel -S $SERVER1 --transferfile {} cat ::: input_file
echo This is input_file > input_file
parallel -S $SERVER1 --transferfile {} --return {}.out \
cat {} ">"{}.out ::: input_file
cat input_file.out
echo This is input_file > input_file
parallel -S $SERVER1 --transferfile {} --return {}.out --cleanup \
cat {} ">"{}.out ::: input_file
cat input_file.out
echo This is input_file > input_file
parallel -S $SERVER1 --trc {}.out cat {} ">"{}.out ::: input_file
cat input_file.out
echo common data > common_file
parallel --basefile common_file -S $SERVER1 \
cat common_file\; echo {} ::: foo
common data
foo
parallel -S $SERVER1 pwd ::: "
parallel --workdir . -S $SERVER1 pwd ::: "
parallel --workdir ... -S $SERVER1 pwd ::: "
/home/parallel
/TMP
/home/parallel/.TMPWORKDIR
parallel -S $SERVER1 --sshdelay 0.2 echo ::: 1 2 3
2016-05-17 00:11:38 +00:00
9
parallel --controlmaster -S $SERVER1 echo ::: 1 2 3
2016-05-17 00:11:38 +00:00
9
parallel --onall -S $SERVER1,$SERVER2 echo ::: foo bar
foo
bar
foo
bar
parallel --nonall --tag -S $SERVER1,$SERVER2 echo foo bar
csh@lo foo bar
parallel@lo foo bar
source `which env_parallel.bash`
alias myecho=echo
myvar="Joe's var is"
env_parallel -S $SERVER1 'myecho $myvar' ::: green
2016-07-22 16:10:28 +00:00
Unknown option: -S
Unknown option: parallel@lo
Unknown option: myecho $myvar
Unknown option: :::
Unknown option: green
You have called the dummy script "env_parallel".
2022-01-22 16:00:32 +00:00
env_parallel only works if it is a function.
You need to do this and restart your shell:
bash: Put this in $HOME/.bashrc: . env_parallel.bash
E.g. by doing: echo '. env_parallel.bash' >> $HOME/.bashrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
2022-01-22 16:00:32 +00:00
fish: Put this in $HOME/.config/fish/config.fish: . (which env_parallel.fish)
E.g. by doing:
echo '. (which env_parallel.fish)' >> $HOME/.config/fish/config.fish
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
ksh: Put this in $HOME/.kshrc: source env_parallel.ksh
E.g. by doing: echo 'source env_parallel.ksh' >> $HOME/.kshrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
mksh: Put this in $HOME/.mkshrc: source env_parallel.mksh
E.g. by doing: echo 'source env_parallel.mksh' >> $HOME/.mkshrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
pdksh: Put this in $HOME/.profile: source env_parallel.pdksh
E.g. by doing: echo '. env_parallel.pdksh' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
zsh: Put this in $HOME/.zshrc: . env_parallel.zsh
E.g. by doing: echo '. env_parallel.zsh' >> $HOME/.zshenv
2021-06-22 17:40:07 +00:00
Supports: variables, functions, arrays
ash: Put this in $HOME/.profile: . env_parallel.ash
E.g. by doing: echo '. env_parallel.ash' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases
dash: Put this in $HOME/.profile: . env_parallel.dash
E.g. by doing: echo '. env_parallel.dash' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases
csh: Put this in $HOME/.cshrc: source `which env_parallel.csh`
E.g. by doing: echo 'source `which env_parallel.csh`' >> $HOME/.cshrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, arrays with no special chars
tcsh: Put this in $HOME/.tcshrc: source `which env_parallel.tcsh`
E.g. by doing: echo 'source `which env_parallel.tcsh`' >> $HOME/.tcshrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, arrays with no special chars
2016-07-22 16:10:28 +00:00
To install in all shells run:
env_parallel --install
2022-05-13 23:27:17 +00:00
In a script you need to run this before using env_parallel:
bash: . env_parallel.bash
ksh: source env_parallel.ksh
mksh: source env_parallel.mksh
pdksh: source env_parallel.pdksh
zsh: . env_parallel.zsh
ash: . env_parallel.ash
dash: . env_parallel.dash
For details: see man env_parallel
MYVAR='foo bar'
export MYVAR
parallel --env MYVAR -S $SERVER1 echo '$MYVAR' ::: baz
foo bar baz
my_func() {
echo in my_func $1
}
export -f my_func
parallel --env my_func -S $SERVER1 my_func ::: baz
in my_func baz
parallel --record-env
cat ~/.parallel/ignored_vars|sort
BASH_FUNC_replace_tmpdir%%
BASH_FUNC_run_once%%
BASH_FUNC_run_test%%
_
mysqlrootpass
qTMPDIR
qqTMPDIR
testsuitedir
2022-01-22 16:00:32 +00:00
withpassword
# The function is only copied if using Bash
my_func2() {
echo in my_func2 $VAR $1
}
export -f my_func2
VAR=foo
export VAR
parallel --env _ -S $SERVER1 'echo $VAR; my_func2' ::: bar
2022-04-23 09:38:57 +00:00
script line 2: my_func2: command not found
NOT='not exported var'
alias myecho=echo
not_ex() {
myecho in not_exported_func $NOT $1
}
env_parallel --env _ -S $SERVER1 'echo $NOT; not_ex' ::: bar
Unknown option: --env
Unknown option: _
Unknown option: -S
Unknown option: parallel@lo
Unknown option: echo $NOT; not_ex
Unknown option: :::
Unknown option: bar
You have called the dummy script "env_parallel".
2022-01-22 16:00:32 +00:00
env_parallel only works if it is a function.
You need to do this and restart your shell:
bash: Put this in $HOME/.bashrc: . env_parallel.bash
E.g. by doing: echo '. env_parallel.bash' >> $HOME/.bashrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
2022-01-22 16:00:32 +00:00
fish: Put this in $HOME/.config/fish/config.fish: . (which env_parallel.fish)
E.g. by doing:
echo '. (which env_parallel.fish)' >> $HOME/.config/fish/config.fish
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
ksh: Put this in $HOME/.kshrc: source env_parallel.ksh
E.g. by doing: echo 'source env_parallel.ksh' >> $HOME/.kshrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
mksh: Put this in $HOME/.mkshrc: source env_parallel.mksh
E.g. by doing: echo 'source env_parallel.mksh' >> $HOME/.mkshrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
pdksh: Put this in $HOME/.profile: source env_parallel.pdksh
E.g. by doing: echo '. env_parallel.pdksh' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
zsh: Put this in $HOME/.zshrc: . env_parallel.zsh
E.g. by doing: echo '. env_parallel.zsh' >> $HOME/.zshenv
2021-06-22 17:40:07 +00:00
Supports: variables, functions, arrays
ash: Put this in $HOME/.profile: . env_parallel.ash
E.g. by doing: echo '. env_parallel.ash' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases
dash: Put this in $HOME/.profile: . env_parallel.dash
E.g. by doing: echo '. env_parallel.dash' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases
csh: Put this in $HOME/.cshrc: source `which env_parallel.csh`
E.g. by doing: echo 'source `which env_parallel.csh`' >> $HOME/.cshrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, arrays with no special chars
tcsh: Put this in $HOME/.tcshrc: source `which env_parallel.tcsh`
E.g. by doing: echo 'source `which env_parallel.tcsh`' >> $HOME/.tcshrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, arrays with no special chars
To install in all shells run:
env_parallel --install
2022-05-13 23:27:17 +00:00
In a script you need to run this before using env_parallel:
bash: . env_parallel.bash
ksh: source env_parallel.ksh
mksh: source env_parallel.mksh
pdksh: source env_parallel.pdksh
zsh: . env_parallel.zsh
ash: . env_parallel.ash
dash: . env_parallel.dash
For details: see man env_parallel
parallel -vv --pipepart --block 1M wc :::: num30000
2022-01-22 16:00:32 +00:00
<num30000 perl -e 'while(@ARGV){sysseek(STDIN,shift,0)||die;$left=shift;while($read=sysread(STDIN,$buf,$left>32767?32767:$left)){$left-=$read;syswrite(STDOUT,$buf);}}' 0 0 0 168894 |(wc)
30000 30000 168894
my_func3() {
echo in my_func $1 > $1.out
}
export -f my_func3
parallel -vv --workdir ... --nice 17 --env _ --trc {}.out \
-S $SERVER1 my_func3 {} ::: abc-file
ssh -l parallel lo -- exec mkdir -p ./.TMPWORKDIR && rsync --protocol 30 --old-args -rlDzR -e'ssh -l parallel' ./abc-file lo:./.TMPWORKDIR;ssh -l parallel lo -- exec perl -X -e GNU_Parallel_worker,eval+pack+q/H10000000/,join+q//,@ARGV BASE64;_EXIT_status=$?; mkdir -p ./. && rsync --protocol 30 --old-args -rlDzR -e'ssh -l parallel' --rsync-path='cd ./.TMPWORKDIR/./.; rsync' -- lo:./abc-file.out ./.;ssh -l parallel lo -- exec 'sh -c '"'"'rm -f ./.TMPWORKDIR/abc-file 2>/dev/null;rmdir ./.TMPWORKDIR/ ./.parallel/tmp/ ./.parallel/ 2>/dev/null;rm -rf ./.TMPWORKDIR;'"'";ssh -l parallel lo -- exec 'sh -c '"'"'rm -f ./.TMPWORKDIR/abc-file.out 2>/dev/null;rmdir ./.TMPWORKDIR/ ./.parallel/tmp/ ./.parallel/ 2>/dev/null;rm -rf ./.TMPWORKDIR;'"'";ssh -l parallel lo -- exec rm -rf .TMPWORKDIR;exit $_EXIT_status;
parset myvar1,myvar2 echo ::: a b
echo $myvar1
echo $myvar2
Unknown option: myvar1,myvar2
Unknown option: echo
Unknown option: :::
Unknown option: a
Unknown option: b
parset only works if it is a function. The function is defined as part
of env_parallel.
Do the below and restart your shell.
bash: Put this in $HOME/.bashrc: . `which env_parallel.bash`
E.g. by doing: echo '. `which env_parallel.bash`' >> $HOME/.bashrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
ksh: Put this in $HOME/.kshrc: source `which env_parallel.ksh`
E.g. by doing: echo 'source `which env_parallel.ksh`' >> $HOME/.kshrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
2018-08-22 22:21:29 +00:00
mksh: Put this in $HOME/.mkshrc: source `which env_parallel.mksh`
E.g. by doing: echo 'source `which env_parallel.mksh`' >> $HOME/.mkshrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
pdksh: Put this in $HOME/.profile: source `which env_parallel.pdksh`
E.g. by doing: echo '. `which env_parallel.pdksh`' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
zsh: Put this in $HOME/.zshrc: . `which env_parallel.zsh`
E.g. by doing: echo '. `which env_parallel.zsh`' >> $HOME/.zshenv
Supports: variables, functions, arrays
ash: Put this in $HOME/.profile: . `which env_parallel.ash`
E.g. by doing: echo '. `which env_parallel.ash`' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases
dash: Put this in $HOME/.profile: . `which env_parallel.dash`
E.g. by doing: echo '. `which env_parallel.dash`' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases
fish: Unsupported
csh: Unsupported
tcsh: Unsupported
To install in all shells run:
parset --install
2022-05-13 23:27:17 +00:00
In a script you need to run this before using parset:
bash: . `which env_parallel.bash`
ksh: source `which env_parallel.ksh`
mksh: source `which env_parallel.mksh`
pdksh: source `which env_parallel.pdksh`
zsh: . `which env_parallel.zsh`
ash: . `which env_parallel.ash`
dash: . `which env_parallel.dash`
For details: see man parset
parset myarray seq {} 5 ::: 1 2 3
echo "${myarray[1]}"
Unknown option: myarray
Unknown option: seq
Unknown option: {}
Unknown option: 5
Unknown option: :::
Unknown option: 1
Unknown option: 2
Unknown option: 3
parset only works if it is a function. The function is defined as part
of env_parallel.
Do the below and restart your shell.
bash: Put this in $HOME/.bashrc: . `which env_parallel.bash`
E.g. by doing: echo '. `which env_parallel.bash`' >> $HOME/.bashrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
ksh: Put this in $HOME/.kshrc: source `which env_parallel.ksh`
E.g. by doing: echo 'source `which env_parallel.ksh`' >> $HOME/.kshrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
2018-08-22 22:21:29 +00:00
mksh: Put this in $HOME/.mkshrc: source `which env_parallel.mksh`
E.g. by doing: echo 'source `which env_parallel.mksh`' >> $HOME/.mkshrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
pdksh: Put this in $HOME/.profile: source `which env_parallel.pdksh`
E.g. by doing: echo '. `which env_parallel.pdksh`' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
zsh: Put this in $HOME/.zshrc: . `which env_parallel.zsh`
E.g. by doing: echo '. `which env_parallel.zsh`' >> $HOME/.zshenv
Supports: variables, functions, arrays
ash: Put this in $HOME/.profile: . `which env_parallel.ash`
E.g. by doing: echo '. `which env_parallel.ash`' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases
dash: Put this in $HOME/.profile: . `which env_parallel.dash`
E.g. by doing: echo '. `which env_parallel.dash`' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases
fish: Unsupported
csh: Unsupported
tcsh: Unsupported
To install in all shells run:
parset --install
2022-05-13 23:27:17 +00:00
In a script you need to run this before using parset:
bash: . `which env_parallel.bash`
ksh: source `which env_parallel.ksh`
mksh: source `which env_parallel.mksh`
pdksh: source `which env_parallel.pdksh`
zsh: . `which env_parallel.zsh`
ash: . `which env_parallel.ash`
dash: . `which env_parallel.dash`
For details: see man parset
cmd=("echo '<<joe \"double space\" cartoon>>'" "pwd")
parset data ::: "${cmd[@]}"
echo "${data[0]}"
echo "${data[1]}"
Unknown option: data
Unknown option: :::
Unknown option: echo '<<joe "double space" cartoon>>'
Unknown option: pwd
parset only works if it is a function. The function is defined as part
of env_parallel.
Do the below and restart your shell.
bash: Put this in $HOME/.bashrc: . `which env_parallel.bash`
E.g. by doing: echo '. `which env_parallel.bash`' >> $HOME/.bashrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
ksh: Put this in $HOME/.kshrc: source `which env_parallel.ksh`
E.g. by doing: echo 'source `which env_parallel.ksh`' >> $HOME/.kshrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
2018-08-22 22:21:29 +00:00
mksh: Put this in $HOME/.mkshrc: source `which env_parallel.mksh`
E.g. by doing: echo 'source `which env_parallel.mksh`' >> $HOME/.mkshrc
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
pdksh: Put this in $HOME/.profile: source `which env_parallel.pdksh`
E.g. by doing: echo '. `which env_parallel.pdksh`' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases, functions, arrays
zsh: Put this in $HOME/.zshrc: . `which env_parallel.zsh`
E.g. by doing: echo '. `which env_parallel.zsh`' >> $HOME/.zshenv
Supports: variables, functions, arrays
ash: Put this in $HOME/.profile: . `which env_parallel.ash`
E.g. by doing: echo '. `which env_parallel.ash`' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases
dash: Put this in $HOME/.profile: . `which env_parallel.dash`
E.g. by doing: echo '. `which env_parallel.dash`' >> $HOME/.profile
2021-06-22 17:40:07 +00:00
Supports: variables, aliases
fish: Unsupported
csh: Unsupported
tcsh: Unsupported
To install in all shells run:
parset --install
2022-05-13 23:27:17 +00:00
In a script you need to run this before using parset:
bash: . `which env_parallel.bash`
ksh: source `which env_parallel.ksh`
mksh: source `which env_parallel.mksh`
pdksh: source `which env_parallel.pdksh`
zsh: . `which env_parallel.zsh`
ash: . `which env_parallel.ash`
dash: . `which env_parallel.dash`
For details: see man parset
2020-04-22 18:15:59 +00:00
parallel --sqlandworker csv:///%2Ftmp/log.csv \
seq ::: 10 ::: 12 13 14
cat /tmp/log.csv
2016-05-17 00:11:38 +00:00
99
Seq,Host,Starttime,JobRuntime,Send,Receive,Exitval,_Signal,Command,V1,V2,Stdout,Stderr
1,:,000000000.000,0.000,0,9,0,0,"seq 10 12",10,12,"10
2016-05-17 00:11:38 +00:00
99
",
2,:,000000000.000,0.000,0,12,0,0,"seq 10 13",10,13,"10
2016-05-17 00:11:38 +00:00
99
",
3,:,000000000.000,0.000,0,15,0,0,"seq 10 14",10,14,"10
2016-05-17 00:11:38 +00:00
99
",
2020-04-22 18:15:59 +00:00
parallel --results outdir --sqlandworker csv:///%2Ftmp/log2.csv \
seq ::: 10 ::: 12 13 14
cat /tmp/log2.csv
Seq,Host,Starttime,JobRuntime,Send,Receive,Exitval,_Signal,Command,V1,V2,Stdout,Stderr
1,:,000000000.000,0.000,0,9,0,0,"seq 10 12",10,12,outdir/1/10/2/12/stdout,outdir/1/10/2/12/stderr
2,:,000000000.000,0.000,0,12,0,0,"seq 10 13",10,13,outdir/1/10/2/13/stdout,outdir/1/10/2/13/stderr
3,:,000000000.000,0.000,0,15,0,0,"seq 10 14",10,14,outdir/1/10/2/14/stdout,outdir/1/10/2/14/stderr
vendor://[[user][:password]@][host][:port]/[database[/table]
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 1: vendor://[[user][:password]@][host][:port]/[database[/table]: No such file or directory
sqlite3:///%2Ftmp%2Fmydatabase/mytable
2020-04-22 18:15:59 +00:00
csv:///%2Ftmp/log.csv
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 1: sqlite3:///%2Ftmp%2Fmydatabase/mytable: No such file or directory
/usr/bin/bash: line 2: csv:///%2Ftmp/log.csv: No such file or directory
DBURL=sqlite3:///%2Ftmp%2Fmydatabase
DBURLTABLE=$DBURL/mytable
parallel --sqlandworker $DBURLTABLE echo ::: foo bar ::: baz quuz
foo baz
foo quuz
bar baz
bar quuz
sql $DBURL 'SELECT * FROM mytable ORDER BY Seq;'
sql: Error: SELECT * FROM mytable ORDER BY Seq; is not a valid DBURL
Usage:
sql [-hnr] [--table-size] [--db-size] [-p pass-through] [-s string] dburl [sqlcommand]
sql [-hnr] [--table-size] [--db-size] [-p pass-through] [-s string] dburl < sql_command_file
See 'man sql' for the options
parallel --sqlmaster $DBURLTABLE echo ::: foo bar ::: baz quuz
parallel: Error: echo is not a valid DBURL
parallel --sqlworker $DBURLTABLE echo ::: foo bar ::: baz quuz
parallel: Error: echo is not a valid DBURL
cat num1000000 | parallel --pipe wc
2016-07-22 16:10:28 +00:00
999999 999999 9999999
2015-08-04 05:54:40 +00:00
85352 85352 597465
cat num1000000 | parallel --pipe --block 2M wc
2016-07-22 16:10:28 +00:00
999999 999999 9999999
85349 85349 597444
2019-04-21 18:16:33 +00:00
cat num1000000 | parallel --pipe -j4 --roundrobin wc
2016-07-22 16:10:28 +00:00
999999 999999 9999999
cat num1000000 | parallel --pipe -N140000 wc
140000 140000 868895
140000 140000 980000
20000 20000 140001
cat num1000000 | parallel --pipe -L75 wc
2016-07-22 16:10:28 +00:00
999999 999999 9999999
2015-08-04 05:54:40 +00:00
85500 85500 598500
25 25 176
cat fixedlen | parallel --pipe --header .{4} --block 3 --recend '' \
'echo start; cat; echo'
start
echo /foo, bar/, /baz, qux/, | \
parallel -kN1 --recend ', ' --pipe echo JOB{#}\;cat\;echo END
/foo, END
bar/, END
/baz, END
qux/,
echo /foo, bar/, /baz, qux/, | \
parallel -kN1 --recstart / --pipe echo JOB{#}\;cat\;echo END
/foo, barEND
/, END
/baz, quxEND
/,
echo /foo, bar/, /baz, qux/, | \
parallel -kN1 --recend ', ' --recstart / --pipe \
echo JOB{#}\;cat\;echo END
/foo, bar/, END
/baz, qux/,
echo foo,bar,_baz,__qux, | \
parallel -kN1 --regexp --recend ,_+ --pipe \
echo JOB{#}\;cat\;echo END
foo,bar,_END
baz,__END
qux,
echo foo,bar,_baz,__qux, | \
parallel -kN1 --rrs --regexp --recend ,_+ --pipe \
echo JOB{#}\;cat\;echo END
foo,barEND
bazEND
qux,
cat num_%header | \
parallel --header '(%.*\n)*' --pipe -N3 echo JOB{#}\;cat
cat: num_%header: No such file or directory
cat num_%header | parallel --header 2 --pipe -N3 echo JOB{#}\;cat
cat: num_%header: No such file or directory
parallel --pipepart -a num1000000 --block 3m wc
2016-07-22 16:10:28 +00:00
999999 999999 9999999
126984 126984 888889
cat input_file | parallel command
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 1: This is input_file: command not found
#!/bin/bash
#!/usr/bin/parallel --shebang -r echo
foo
bar
baz
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 1: foo: command not found
/usr/bin/bash: line 2: bar: command not found
/usr/bin/bash: line 3: baz: command not found
cat input_file | parallel command
parallel command ::: foo bar
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 1: This is input_file: command not found
/usr/bin/bash: line 1: foo: command not found
/usr/bin/bash: line 1: bar: command not found
cat input_file | command
command foo bar
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 2: foo: command not found
#!/usr/bin/perl
print "@ARGV\n"
Warning: unknown mime-type for "@ARGV\n" -- using "application/octet-stream"
Error: no such file "@ARGV\n"
parallel perl_echo ::: foo bar
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 1: perl_echo: command not found
#!/usr/bin/parallel --shebang-wrap /usr/bin/perl
print "@ARGV\n"
Warning: unknown mime-type for "@ARGV\n" -- using "application/octet-stream"
Error: no such file "@ARGV\n"
perl_echo foo bar
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 1: perl_echo: command not found
#!/usr/bin/parallel --shebang-wrap /usr/bin/perl
print "Arguments @ARGV\n";
Warning: unknown mime-type for "Arguments @ARGV\n" -- using "application/octet-stream"
Error: no such file "Arguments @ARGV\n"
#!/usr/bin/parallel --shebang-wrap /usr/bin/python
print 'Arguments', str(sys.argv)
#!/usr/bin/parallel --shebang-wrap /bin/bash
echo Arguments "$@"
Arguments
#!/usr/bin/parallel --shebang-wrap /bin/csh
echo Arguments "$argv"
Arguments
#!/usr/bin/parallel --shebang-wrap /usr/bin/tclsh
puts "Arguments $argv"
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 3: puts: command not found
#!/usr/bin/parallel --shebang-wrap /usr/bin/Rscript --vanilla --slave
args <- commandArgs(trailingOnly = TRUE)
print(paste("Arguments ",args))
#!/usr/bin/parallel --shebang-wrap ARG={} /usr/bin/gnuplot
print "Arguments ", system('echo $ARG')
#!/usr/bin/parallel --shebang-wrap /usr/bin/ruby
print "Arguments "
puts ARGV
Warning: unknown mime-type for "Arguments " -- using "application/octet-stream"
Error: no such file "Arguments "
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 4: puts: command not found
#!/usr/bin/parallel --shebang-wrap /usr/bin/octave
printf ("Arguments");
arg_list = argv ();
for i = 1:nargin
printf (" %s", arg_list{i});
endfor
printf ("\n");
#!/usr/bin/parallel --shebang-wrap /usr/bin/clisp
(format t "~&~S~&" 'Arguments)
(format t "~&~S~&" *args*)
#!/usr/bin/parallel --shebang-wrap /usr/bin/php
<?php
echo "Arguments";
foreach(array_slice($argv,1) as $v)
{
echo " $v";
}
echo "\n";
?>
Arguments
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 2: ?php: No such file or directory
#!/usr/bin/parallel --shebang-wrap /usr/bin/node
var myArgs = process.argv.slice(2);
console.log('Arguments ', myArgs);
#!/usr/bin/parallel --shebang-wrap /usr/bin/lua
io.write "Arguments"
for a = 1, #arg do
io.write(" ")
io.write(arg[a])
end
print(")
2022-05-22 08:36:45 +00:00
/usr/bin/bash: line 3: io.write: command not found
#!/usr/bin/parallel --shebang-wrap ARGV={} /usr/bin/csharp
var argv = Environment.GetEnvironmentVariable("ARGV");
print("Arguments "+argv);
sem 'sleep 1; echo The first finished' &&
echo The first is now running in the background &&
sem 'sleep 1; echo The second finished' &&
echo The second is now running in the background
sem --wait
The first is now running in the background
The first finished
The second is now running in the background
sem --fg 'sleep 1; echo The first finished' &&
echo The first finished running in the foreground &&
sem --fg 'sleep 1; echo The second finished' &&
echo The second finished running in the foreground
sem --wait
The first finished
The first finished running in the foreground
The second finished running in the foreground
sem --id foo -u 'echo Slow started; sleep 5; echo Slow ended' &&
sem --id foo --semaphoretimeout 1 'echo Forced running after 1 sec' &&
sem --id foo --semaphoretimeout -2 'echo Give up after 2 secs'
sem --id foo --wait
Slow started
Forced running after 1 sec
Slow ended
parallel: Warning: Semaphore timed out. Stealing the semaphore.
parallel --help
Usage:
parallel [options] [command [arguments]] < list_of_arguments
parallel [options] [command [arguments]] (::: arguments|:::: argfile(s))...
cat ... | parallel --pipe [options] [command [arguments]]
-j n Run n jobs in parallel
-k Keep same order
-X Multiple arguments with context replace
--colsep regexp Split input on regexp for positional replacements
{} {.} {/} {/.} {#} {%} {= perl code =} Replacement strings
{3} {3.} {3/} {3/.} {=3 perl code =} Positional replacement strings
With --plus: {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..} =
{+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}
-S sshlogin Example: foo@server.example.com
--slf .. Use ~/.parallel/sshloginfile as the list of sshlogins
--trc {}.bar Shorthand for --transfer --return {}.bar --cleanup
--onall Run the given command with argument on all sshlogins
--nonall Run the given command with no arguments on all sshlogins
--pipe Split stdin (standard input) to multiple jobs.
--recend str Record end separator for --pipe.
--recstart str Record start separator for --pipe.
GNU Parallel can do much more. See 'man parallel' for details
Academic tradition requires you to cite works you base your article on.
If you use programs that use GNU Parallel to process data for an article in a
scientific publication, please cite:
2020-09-23 15:41:03 +00:00
Zenodo.
This helps funding further development; AND IT WON'T COST YOU A CENT.
If you pay 10000 EUR you should feel free to use GNU Parallel without citing.
parallel --version
GNU parallel VERSION
2024-01-24 01:02:07 +00:00
Copyright (C) 2007-2024 Ole Tange, http://ole.tange.dk and Free Software
2020-02-23 00:10:44 +00:00
Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <https://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
GNU parallel comes with no warranty.
Web site: https://www.gnu.org/software/parallel
When using programs that use GNU Parallel to process data for publication
please cite as described in 'parallel --citation'.
parallel --minversion VERSION && \
echo Your version is at least VERSION.
Your version is at least VERSION.
parallel --citation
Academic tradition requires you to cite works you base your article on.
If you use programs that use GNU Parallel to process data for an article in a
scientific publication, please cite:
2020-09-23 15:41:03 +00:00
author = {Tange, Ole},
2020-09-23 15:41:03 +00:00
year = 2024,
note = {{GNU Parallel is a general parallelizer to run
multiple serial command line programs in parallel
without changing them.}},
publisher = {Zenodo},
2020-09-23 15:41:03 +00:00
url = {
}
2020-09-23 15:41:03 +00:00
This helps funding further development; AND IT WON'T COST YOU A CENT.
If you pay 10000 EUR you should feel free to use GNU Parallel without citing.
More about funding GNU Parallel and the citation notice:
2019-04-21 18:16:33 +00:00
https://lists.gnu.org/archive/html/parallel/2013-11/msg00006.html
https://www.gnu.org/software/tempfileallel_design.html#citation-notice
https:BASE64-notice-faq.txt
parallel --number-of-cpus
parallel --number-of-cores
2016-05-17 00:11:38 +00:00
9
echo '--nice 17' > ~/.parallel/nicetimeout
echo '--timeout 300%' >> ~/.parallel/nicetimeout
parallel --profile nicetimeout echo ::: A B C
echo '-vv --dry-run' > ~/.parallel/dryverbose
parallel --profile dryverbose --profile nicetimeout echo ::: A B C
2015-08-04 05:54:40 +00:00
echo A
echo B
echo C
### 3+3 .par files (from --files), 1 .tms-file from tmux attach
A
A
B
B
C
C